Anna Yudenko

Anna Yudenko

Biophysicist

Laboratory of structural analysis and engineering of membrane systems, MIPT

About me

I’m Anna, a biophysicist with background in Solid-state Physics. I work as a researcher in Laboratory of Structural Analysis and Engineering of Membrane Systems.

I completed my PhD at Moscow Institute of Physics and Technology, where I studied flavin-binding fluorescent proteins and engineered fluorescent microscopy tools based on them.

I’m very interested in Protein Engineering and Synthetic Biology.

Education

Publications

1.
Yudenko, A., Smolentseva, A., Maslov, I., Semenov, O., et al. Rational design of a split flavin-based fluorescent reporter. ACS Synthetic Biology 10, 72–83 (2021).
2.
Nikolaev, A., Yudenko, A., Smolentseva, A., Bogorodskiy, A., et al. Fine spectral tuning of a flavin-binding fluorescent protein for multicolor imaging. Journal of Biological Chemistry 299, (2023).
3.
Remeeva, A., Yudenko, A., Nazarenko, V. V., Semenov, O., et al. Development and characterization of flavin-binding fluorescent proteins, part i: Basic characterization. in Fluorescent proteins 121–141 (Humana, New York, NY, 2023).
4.
Orekhov, P. S., Bozdaganyan, M. E., Voskoboynikova, N., Mulkidjanian, A. Y., et al. Mechanisms of formation, structure, and dynamics of lipoprotein discs stabilized by amphiphilic copolymers: A comprehensive review. Nanomaterials 12, 361 (2022).
5.
Smolentseva, A., Goncharov, I. M., Yudenko, A., Bogorodskiy, A., et al. Extreme dependence of chloroflexus aggregans LOV domain thermo-and photostability on the bound flavin species. Photochemical & photobiological sciences 20, 1645–1656 (2021).
6.
Nazarenko, V., Remeeva, A., Ryzhykau, Y., Orekhov, P., et al. Small angle x-ray scattering study of a histidine kinase embedded in styrene-maleic acid copolymer lipid particles. The FASEB Journal 35, (2021).
7.
Eliseev, I. E., Ukrainskaya, V. M., Yudenko, A. N., Mikushina, A. D., et al. Targeting erbb3 receptor in cancer with inhibitory antibodies from llama. Biomedicines 9, 1106 (2021).
8.
Goncharov, I. M., Smolentseva, A., Semenov, O., Natarov, I., et al. High-resolution structure of a naturally red-shifted LOV domain. Biochemical and Biophysical Research Communications 567, 143–147 (2021).
9.
Remeeva, A., Nazarenko, V. V., Kovalev, K., Goncharov, I. M., et al. Insights into the mechanisms of light-oxygen-voltage domain color tuning from a set of high-resolution x-ray structures. Proteins: Structure, Function, and Bioinformatics 89, 1005–1016 (2021).
10.
Remeeva, A., Nazarenko, V. V., Goncharov, I. M., Yudenko, A., et al. Effects of proline substitutions on the thermostable LOV domain from chloroflexus aggregans. Crystals 10, 256 (2020).
11.
Nazarenko, V. V., Remeeva, A., Yudenko, A., Kovalev, K., et al. A thermostable flavin-based fluorescent protein from chloroflexus aggregans: A framework for ultra-high resolution structural studies. Photochemical & photobiological sciences 18, 1793–1805 (2019).
12.
Eliseev, I. E., Yudenko, A. N., Ukrainskaya, V. M. & Chakchir, O. B. Cadmium SAD phasing at CuKα wavelength. F1000Research 8, (2019).
13.
Eliseev, I. E., Terterov, I. N., Yudenko, A. N. & Shamova, O. V. Linking sequence patterns and functionality of alpha-helical antimicrobial peptides. Bioinformatics (2019).
14.
Eliseev, I., Yudenko, A., Besedina, N., Ulitin, A., et al. Thermodynamic analysis of the conformational stability of a single-domain therapeutic antibody. Technical Physics Letters 43, 1088–1091 (2017).
15.
Eliseev, I. E., Yudenko, A. N., Vysochinskaya, V. V., Svirina, A. A., et al. Crystal structures of a llama VHH antibody BCD090-M2 targeting human ErbB3 receptor. F1000Research 7, (2018).
16.
Sokolovskiy, A., Trushin, Y. V., Lubov, M., Eliseev, I., et al. A numerical model of protein crystallization with counter diffusion method. in Journal of physics: Conference series vol. 741 012053 (IOP Publishing, 2016).
17.
Shevtsov, M. A., Nikolaev, B. P., Yakovleva, L. Y., Parr, M. A., et al. 70-kDa heat shock protein coated magnetic nanocarriers as a nanovaccine for induction of anti-tumor immune response in experimental glioma. Journal of Controlled Release 220, 329–340 (2015).
18.
Rodina, N. P., Yudenko, A. N., Terterov, I. N. & Eliseev, I. E. A molecular dynamics and circular dichroism study of a novel synthetic antimicrobial peptide. in Journal of physics: Conference series vol. 461 012015 (IOP Publishing, 2013).